My personal opinion here, even though we have added some minor adjustments to the servers, I am hesitant to change the TCs themselves. I know we have the "Remove Tool", which in all honest helps when one needs to move a wall in their base. Removing or adjusting the Tool Cupboards is tricky proposition.
Rust is not a game where your base should be expected to last long, Rust will always be more enjoyable to those who invest more time into the game. This is pretty much how it has been since its early days. Just like other survival games, bases get destroyed, loot gets stolen, and it will typically bring out the worst in people. No-one should be trusted (even a naked). To think other wise will only bring frustration. Ive personally seen many of rust admins try to police this, and all that winds up are arbitrary rules that are hardly enforceable or Admins who are heavy handed. There is no perfect balance here. We are trying to be as vanilla as possible and this is one of the outcomes.
Just comes down to expectations; "Dont get attached to your stuff" addage will go a long way.